PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005690.1_g000017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 326aa MW: 36847.5 Da PI: 4.3873 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.4e-19 | 91 | 144 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k Rmu_sc0005690.1_g000017.1 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 144 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 5e-41 | 91 | 182 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 kkrrl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++ y++lk++ +++ ke++ Rmu_sc0005690.1_g000017.1 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQADYNSLKADCDSICKEND 174 9*********************************************************************************** PP HD-ZIP_I/II 86 eLreelke 93 +L++e+ + Rmu_sc0005690.1_g000017.1 175 KLKAEVVQ 182 ***99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence |
MAGGGRVYSS SGGASFLLQN QRGSCAPEPL DSLFLSGSSN VSSTSPFLGS SMMSFEGVRR 60 GNGLKRSAFQ QYEHEDNCDE EFDEYFHQPG KKRRLTADQV QFLEKSFDLE NKLEPERKIL 120 LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQADYN SLKADCDSIC KENDKLKAEV 180 VQLSDRLRLK DEEMANSEQS DTNKSNQEPQ QMPIAESVSS EGEVSKLSVV ACKEDLTSVK 240 SDIFDSDSSH YTDGVHSSLL ERGDSSYIFE PDQSDLSQDE EDNLSKTLLP PYIFPKLEDV 300 DYTDPPANSC NFGFPVEDHA FWSWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-44 | HD-ZIP family protein |