PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005656.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 512aa MW: 56248.7 Da PI: 7.4222

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005656.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.2e-07	253	273	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Rmu_sc0005656.1_g000004.1 253 PCPEFRK-GSCQKGDVCEYAHG 273 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MENEFQNQNG GSLYKSSVLV ELSASDNLDA FRSEVEEKGF HVDEASFWYG RGIGSKKMGF 60 EERTPLMIAA MFGSTKVLKY IIDSGKVEVN RSCGSDRVTA LHCATAGGSS SSLEVVKLLL 120 DASADANCVT ANGNKPVDLI APALKSPCNS RRKAMEMLLK GDMSLLGSDI DDQEVPSLQL 180 LKEGSEKKEY PIDIALPDIN NGIYGSDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYPYS CVPCPEFRKG SCQKGDVCEY AHGVFESWLH PAQYRTRLCK DETGCTRKVC 300 FFAHKPEELR PVYVSTGSAM PSPRSMSASA GDMTTMSPLA LGSPSLSMPT ASTPPMSPIA 360 ASSPKNGGLW QNKVNLTPPA LQLPGSRLKS ASSARDLDLE MEFLGRDNHA NQQQQQQQQQ 420 QQVIGLETGA VGFRSVWLSS DGGDRVCGGG REFGSCNRAV DPLGWAWGWR RWEHRFIHHG 480 IGHSSFGFVP LWWCGPCINF LGLKSHIGPS LP

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MENEFQNQNG GSLYKSSVLV ELSASDNLDA FRSEVEEKGF HVDEASFWYG RGIGSKKMGF  60
EERTPLMIAA MFGSTKVLKY IIDSGKVEVN RSCGSDRVTA LHCATAGGSS SSLEVVKLLL  120
DASADANCVT ANGNKPVDLI APALKSPCNS RRKAMEMLLK GDMSLLGSDI DDQEVPSLQL  180
LKEGSEKKEY PIDIALPDIN NGIYGSDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYS CVPCPEFRKG SCQKGDVCEY AHGVFESWLH PAQYRTRLCK DETGCTRKVC  300
FFAHKPEELR PVYVSTGSAM PSPRSMSASA GDMTTMSPLA LGSPSLSMPT ASTPPMSPIA  360
ASSPKNGGLW QNKVNLTPPA LQLPGSRLKS ASSARDLDLE MEFLGRDNHA NQQQQQQQQQ  420
QQVIGLETGA VGFRSVWLSS DGGDRVCGGG REFGSCNRAV DPLGWAWGWR RWEHRFIHHG  480
IGHSSFGFVP LWWCGPCINF LGLKSHIGPS LP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-156	C3H family protein