PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005631.1_g000025.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 477aa MW: 54497.4 Da PI: 6.5761

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005631.1_g000025.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.5	8.3e-24	96	196	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k Rmu_sc0005631.1_g000025.1 96 KWTDTMVRLLIMAVFYIGDEGGSEGpdptgkkksgggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 179 7**************9999975446667788999999******************************************* PP trihelix 71 r.tsessstcpyfdqle 86 + +++++++ +++++e Rmu_sc0005631.1_g000025.1 180 GtACKVVENQGLLEKME 196 *5599999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MRSGMLGLEM PLHQTQNPPN PQNPHHHMHQ PQMVSYAHHE ADHNHHPQAH QSAKHGYPYA 60 TKPKQITLSD EDEPGFGADD SAGENKRKIS PWQRMKWTDT MVRLLIMAVF YIGDEGGSEG 120 PDPTGKKKSG GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY KRVNDILGKG 180 TACKVVENQG LLEKMELSSK MKDEVKKLLN SKHLFFREMC AYHNSCGHGT VGAAGASGVH 240 NSSPEDPSEV QLQQQQQQTP QQQRCFHVSE NAHVVANSGR SETEGSKMFK AESGGEDEDE 300 DDEDDDSEDD DDEEEEGVVE GVSRGQIGHG HEDEDENDHE RAKRPRKGSC FSGSSHKMLM 360 QQLSSEVSGV IQDVSKSPWE KKQWMKARLI QLEEQQVNYQ YQSFELEKQR LKWVKYSSKK 420 ERDMERAKLA NERRRLENER MLLLVRQKEL ELLDLHHHQQ QQHQQQNSSN KRSDLTG

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MRSGMLGLEM PLHQTQNPPN PQNPHHHMHQ PQMVSYAHHE ADHNHHPQAH QSAKHGYPYA  60
TKPKQITLSD EDEPGFGADD SAGENKRKIS PWQRMKWTDT MVRLLIMAVF YIGDEGGSEG  120
PDPTGKKKSG GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY KRVNDILGKG  180
TACKVVENQG LLEKMELSSK MKDEVKKLLN SKHLFFREMC AYHNSCGHGT VGAAGASGVH  240
NSSPEDPSEV QLQQQQQQTP QQQRCFHVSE NAHVVANSGR SETEGSKMFK AESGGEDEDE  300
DDEDDDSEDD DDEEEEGVVE GVSRGQIGHG HEDEDENDHE RAKRPRKGSC FSGSSHKMLM  360
QQLSSEVSGV IQDVSKSPWE KKQWMKARLI QLEEQQVNYQ YQSFELEKQR LKWVKYSSKK  420
ERDMERAKLA NERRRLENER MLLLVRQKEL ELLDLHHHQQ QQHQQQNSSN KRSDLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-72	Trihelix family protein