PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005612.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 440aa MW: 47595.6 Da PI: 4.4289

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005612.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	261	306	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+Pk+ K +Ka++L + +eY+k Lq Rmu_sc0005612.1_g000002.1 261 HSIAERLRREKIADRMKNLQELVPKS-----NKTDKASMLDEIIEYVKFLQ 306 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MNNEEEEEEA RNRKNGGEGS SSSWTDVDVK ERSSLDCYEN PPTNEMFLSS LGVIEDDSNN 60 SATNLSNSNH SMESMAAQSA NSSVAHDFES DAQDNGNNCA ANFSINDQMG LQYDLDGNMA 120 RSTSVSSLEP QNVGGNCCEQ SVFQRLNGDI ETLSPISQLC PLQAYEGFSS PLCPPGMGQQ 180 KLCSFGSNDI YELSDLVTTE KVSQEMGNYP LPSFASGPQI PMAMTGLQSF PQTTSTNPSA 240 ECTGPRKPRM RARRGQATDP HSIAERLRRE KIADRMKNLQ ELVPKSNKTD KASMLDEIIE 300 YVKFLQQQLK VLSARRLGAT GAVILDNQAK GTNGISQSPS LGQVAHDISF NEIAFEQVLK 360 LMETDVTKAM HYLQSKGLCM MPVALANAIL AEKESSPAPD SAENLKNSGF TDDGFVHNPS 420 SSSSSNSNTL PGTDKTAVNP

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MNNEEEEEEA RNRKNGGEGS SSSWTDVDVK ERSSLDCYEN PPTNEMFLSS LGVIEDDSNN  60
SATNLSNSNH SMESMAAQSA NSSVAHDFES DAQDNGNNCA ANFSINDQMG LQYDLDGNMA  120
RSTSVSSLEP QNVGGNCCEQ SVFQRLNGDI ETLSPISQLC PLQAYEGFSS PLCPPGMGQQ  180
KLCSFGSNDI YELSDLVTTE KVSQEMGNYP LPSFASGPQI PMAMTGLQSF PQTTSTNPSA  240
ECTGPRKPRM RARRGQATDP HSIAERLRRE KIADRMKNLQ ELVPKSNKTD KASMLDEIIE  300
YVKFLQQQLK VLSARRLGAT GAVILDNQAK GTNGISQSPS LGQVAHDISF NEIAFEQVLK  360
LMETDVTKAM HYLQSKGLCM MPVALANAIL AEKESSPAPD SAENLKNSGF TDDGFVHNPS  420
SSSSSNSNTL PGTDKTAVNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-51	bHLH family protein