PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005442.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25064.1 Da PI: 11.3785 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.00021 | 152 | 196 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rErrR + ++ L +l+P + +K Le++++YI L Rmu_sc0005442.1_g000012.1 152 DVRRERRRTPAVQKKVKVLSQLVPGC-----RKAPLPNLLEETTDYIAAL 196 5679*********************9.....67777789********988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
LNHFFLCSFK ASEFLYLLNC TFGYAAFMAA SFVSNPDPCL DSSRKKRRKV EDDRNPASTT 60 QARWRSDKEQ RIYSTKLVEA LRKVRQGSSS SPVAVSGGKI VKEAADRVLA VAAKGTTRWS 120 RAILRSRLRL SKRLQKCRKA RVTGDSRCKR ADVRRERRRT PAVQKKVKVL SQLVPGCRKA 180 PLPNLLEETT DYIAALEMQV RAMTVLTELL SGAPAANRLN FTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 49 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06590.2 | 2e-19 | bHLH family protein |