PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005327.1_g000024.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 451aa MW: 52413 Da PI: 4.7629

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005327.1_g000024.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.2	4.7e-17	13	148	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.diy.....kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknr..a 77 FhPt+ elv ++L +k++ +++ ++i+++ +i+ + Pw++ + ++k ++ +yfFs+++k +++++r++r Rmu_sc0005327.1_g000024.1 13 TFHPTEAELVGFFLYNKISMASNPG-NHIQTFpEICiygetGLPPWEIWRvyqQFKFpPQDFLYFFSRAKKVSPNKSRNSRpvG 95 5***************9999666.3344444444112224589999632223333233356**************633 PP NAM 78 tksgyWkatgkdkevlskkgel.vglkktLvfykgrapk.gektdWvmheyrl 128 + g+W++t ++v+ +++e+ g + + + k+++++ +++ W+m+ey++ Rmu_sc0005327.1_g000024.1 96 SDGGTWSETEAGRPVYISGSEEaFGKVRKFWYEKNKDKTfVHHAAWLMEEYTI 148 5599*********955551666666666655433315699*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MTLDQLDVGV VKTFHPTEAE LVGFFLYNKI SMASNPGNHI QTFPEICIYG ETGLPPWEIW 60 RVYQQFKFPP QDFLYFFSRA KKVSPNKSRN SRPVGSDGGT WSETEAGRPV YISGSEEAFG 120 KVRKFWYEKN KDKTFVHHAA WLMEEYTINQ APDLALCRLK INDKGGGRKK RKKSSNVERD 180 GSRKFRYEKN KDKTFVHHAA WLMEEYTINQ APDLALCRLK VNDKGGGRKK RKKSFDETNE 240 DQNVRSKKCL KNRKVEPRRD QTSFLDPEEQ QEGSASFATT TSQLILSPYH HEDDQVVQVV 300 PENNYDYDKL QQILFSDDDC MDENLMFSPT ILFDDAQLMA YVDRSVSSEQ QQQQDSDYSL 360 APQQQLEPDN RCQEEDQIQQ EDQPSSSHSH EQQQLIGDDD LMISGQRDYN IPLDNDFLWS 420 DEFNGLLTHE DQLGALPWWE TDDQFQYSDI L

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MTLDQLDVGV VKTFHPTEAE LVGFFLYNKI SMASNPGNHI QTFPEICIYG ETGLPPWEIW  60
RVYQQFKFPP QDFLYFFSRA KKVSPNKSRN SRPVGSDGGT WSETEAGRPV YISGSEEAFG  120
KVRKFWYEKN KDKTFVHHAA WLMEEYTINQ APDLALCRLK INDKGGGRKK RKKSSNVERD  180
GSRKFRYEKN KDKTFVHHAA WLMEEYTINQ APDLALCRLK VNDKGGGRKK RKKSFDETNE  240
DQNVRSKKCL KNRKVEPRRD QTSFLDPEEQ QEGSASFATT TSQLILSPYH HEDDQVVQVV  300
PENNYDYDKL QQILFSDDDC MDENLMFSPT ILFDDAQLMA YVDRSVSSEQ QQQQDSDYSL  360
APQQQLEPDN RCQEEDQIQQ EDQPSSSHSH EQQQLIGDDD LMISGQRDYN IPLDNDFLWS  420
DEFNGLLTHE DQLGALPWWE TDDQFQYSDI L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	173	KKRKK
2	229	233	KKRKK
3	229	251	KKRKKSFDETNEDQNVRSKKCLK
4	230	252	KKRKKSFDETNEDQNVRSKKCLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	1e-09	NAC family protein