PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005292.1_g000027.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 776aa MW: 87057.1 Da PI: 5.4516

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005292.1_g000027.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	168	190	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+ +tG Ck+G++C+F+H+ Rmu_sc0005292.1_g000027.1 168 EDCSFYPKTGNCKFGSNCRFNHP 190 89********************9 PP
2	zf-CCCH	27.5	5.4e-09	215	239	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r G CkyG C+++Hg+ Rmu_sc0005292.1_g000027.1 215 QTECKYYLRPGGCKYGKACRYNHGK 239 568********************96 PP
3	zf-CCCH	34.9	2.6e-11	262	284	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++++G C+yG++C+F+H+ Rmu_sc0005292.1_g000027.1 262 RECSYYMQNGSCRYGSNCRFNHP 284 79********************9 PP
4	zf-CCCH	27.5	5.5e-09	377	403	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+ff+rtG Ck+ ++Ck++H++ Rmu_sc0005292.1_g000027.1 377 PGQRLCSFFLRTGDCKFKSNCKYHHPK 403 5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence
MELSESSSSV FPNLDLHIGN SNEIDQVQLN HSDIGSQRST AADQQLDNHS GGDAAVSHSS 60 PDPDVVDVVD HAVVDEIERL DLRGDDVAVE VAAAEVEEKK EEGGEVEAEE KSSNGGGGEI 120 ENGNESERQS EEEESNEGEN RSENGGEGEK KGGEYNTRYR YPVRPEAEDC SFYPKTGNCK 180 FGSNCRFNHP VRRKNNQVFK DKVKEKDALS EKPSQTECKY YLRPGGCKYG KACRYNHGKG 240 KPSVAPVVEL NFLGLPIRRG GRECSYYMQN GSCRYGSNCR FNHPDPTAAS LQGGSQSSSW 300 SAPRSLNETP LYMPMMMPPS QGVPSQNTEW NGYQAPVYLE RSMPARPPYV INNSGTKTNV 360 YKQYPPSNQV DEFPERPGQR LCSFFLRTGD CKFKSNCKYH HPKSQTAVSP SFALSDKGLP 420 LRPLFRPAYA IMLKHLRSEA LENFKIRLER SLVQREGFAS SVLAHTESCM REFDQACADA 480 SIDVAINSNG NAYGVDKEKA KRKLKCDIEA YASSQLDEQL SRLKLDCERQ LWEALSLNDP 540 IAALLLDGDD DIWRKKRGLL HDAIELVDER FSNEINGYAL DQGRSAEMMQ ILRDHARRVA 600 EEKPRQEATR VLTHMVNRFL RAFNYDSDAN ARTWTVEVDI RIIIRNARYE SLKILSTLAA 660 IRLDKTQDDI ERVLSSTLID GEISSTNVLD SVITWDMVSS NDTLITPLEC QLLWRQFKEQ 720 TEPAVFQAYA TQVAIDGIKK RSSRPRWFRA KPSPEIEVQI GAALSWKSTL DPPCTA

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence

MELSESSSSV FPNLDLHIGN SNEIDQVQLN HSDIGSQRST AADQQLDNHS GGDAAVSHSS  60
PDPDVVDVVD HAVVDEIERL DLRGDDVAVE VAAAEVEEKK EEGGEVEAEE KSSNGGGGEI  120
ENGNESERQS EEEESNEGEN RSENGGEGEK KGGEYNTRYR YPVRPEAEDC SFYPKTGNCK  180
FGSNCRFNHP VRRKNNQVFK DKVKEKDALS EKPSQTECKY YLRPGGCKYG KACRYNHGKG  240
KPSVAPVVEL NFLGLPIRRG GRECSYYMQN GSCRYGSNCR FNHPDPTAAS LQGGSQSSSW  300
SAPRSLNETP LYMPMMMPPS QGVPSQNTEW NGYQAPVYLE RSMPARPPYV INNSGTKTNV  360
YKQYPPSNQV DEFPERPGQR LCSFFLRTGD CKFKSNCKYH HPKSQTAVSP SFALSDKGLP  420
LRPLFRPAYA IMLKHLRSEA LENFKIRLER SLVQREGFAS SVLAHTESCM REFDQACADA  480
SIDVAINSNG NAYGVDKEKA KRKLKCDIEA YASSQLDEQL SRLKLDCERQ LWEALSLNDP  540
IAALLLDGDD DIWRKKRGLL HDAIELVDER FSNEINGYAL DQGRSAEMMQ ILRDHARRVA  600
EEKPRQEATR VLTHMVNRFL RAFNYDSDAN ARTWTVEVDI RIIIRNARYE SLKILSTLAA  660
IRLDKTQDDI ERVLSSTLID GEISSTNVLD SVITWDMVSS NDTLITPLEC QLLWRQFKEQ  720
TEPAVFQAYA TQVAIDGIKK RSSRPRWFRA KPSPEIEVQI GAALSWKSTL DPPCTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-86	C3H family protein