PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005173.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 366aa MW: 40888.7 Da PI: 4.389

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005173.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.2e-12	199	242	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Rmu_sc0005173.1_g000020.1 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 242 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MELTQHGFLE ELLAPIRRES WNTYSSGFNE FFPMNNGWSF DSNFEANPVL VSSSNPEFGV 60 FSTQTEPTFE CPLLTEQQAS SFPFVDGGGV LTVPADIESS YTNNNDSNTP PFPPQDQDYP 120 SMVEDEEFGN FLGSENQSSC LELEESKNST CKVETEQQGT TITTDHGDMP VAFNMGLCGG 180 KRSCSSKPKK LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK 240 ELLERISKLQ EEKTEEGTNQ FSLIGINKDL NPSEVLVRNS PKFDVERRDM DTRIDICCAA 300 KPGLLLSTVS TIEALGLEIQ QCVISCFNDF SLQASCSEGA EQRTMINSEE IKQALFRNAG 360 YGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MELTQHGFLE ELLAPIRRES WNTYSSGFNE FFPMNNGWSF DSNFEANPVL VSSSNPEFGV  60
FSTQTEPTFE CPLLTEQQAS SFPFVDGGGV LTVPADIESS YTNNNDSNTP PFPPQDQDYP  120
SMVEDEEFGN FLGSENQSSC LELEESKNST CKVETEQQGT TITTDHGDMP VAFNMGLCGG  180
KRSCSSKPKK LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK  240
ELLERISKLQ EEKTEEGTNQ FSLIGINKDL NPSEVLVRNS PKFDVERRDM DTRIDICCAA  300
KPGLLLSTVS TIEALGLEIQ QCVISCFNDF SLQASCSEGA EQRTMINSEE IKQALFRNAG  360
YGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	209	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-95	bHLH family protein