PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005162.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 745aa MW: 83089.9 Da PI: 5.788

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005162.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	129	151	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+r G+C+ d+C+F+Hgp Rmu_sc0005162.1_g000002.1 129 VPCIFFQR-GFCSKADKCPFSHGP 151 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MVVGAQPKPQ PQSQPQQLQQ QQPQPEASAE EEALKRNTDC VYFLASPVSC KKGSECEYRH 60 SEHALYNPRD CWFWLNGNCL NLKCSFRHPP LDGLLGSPAA SSAGPSLPLS HTATTPATNA 120 TFNSSKQAVP CIFFQRGFCS KADKCPFSHG PNPITSSKVP QAPAATHGTE PSSLKKIFGG 180 IQKCTQEMKI PQVSASKIVG VPPQSKPAPK VETAPPRNGV GIERNVLVTR DFDDEALRYK 240 ARSVLPAMNG DSTGQANHFL QAHVSENHGF QNGKDVDEHL RESSPGFDVL VDDELGDSDY 300 YHGEEQFGIK RGHDGRNLNS VNEYDLDCPT DYNSIADGDR ERFRDPRGYG PYDQMQGRYA 360 WDQHRASSER LLVGSAHSER RGYRKSDSPD HIDGSDLRHR LSKHRRGNGL RSIISNDYDG 420 HVEERKSRPR RDSQQLPSHE GSLSSRLRGR IKLPGGSSPV NSSDLRQERE ADRGRSRDRS 480 RDRLSPRRPQ IMSHQGRLRD RIQGRVQEDY NNEVRNFGVP RMRREIVDER STEFSHPKRL 540 SDLKGGVDAE IREHSYLGKP NNVKMDNNQL SEGDLSFEGP KPLSEILKRK REAEAAAASG 600 SRKRSSVNKQ RNNEKEGPVR NPGGSETGAI TMMHNSQSPV AKEETKSATT DAVGAENEKI 660 DVAPGQSSEG HNDGELETED GLIYDETLED HELDGEDQRE GEYDYEQGED GEYTYEEGEN 720 ADAEEEYLEE EDGDDFAKKI GVMFS

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MVVGAQPKPQ PQSQPQQLQQ QQPQPEASAE EEALKRNTDC VYFLASPVSC KKGSECEYRH  60
SEHALYNPRD CWFWLNGNCL NLKCSFRHPP LDGLLGSPAA SSAGPSLPLS HTATTPATNA  120
TFNSSKQAVP CIFFQRGFCS KADKCPFSHG PNPITSSKVP QAPAATHGTE PSSLKKIFGG  180
IQKCTQEMKI PQVSASKIVG VPPQSKPAPK VETAPPRNGV GIERNVLVTR DFDDEALRYK  240
ARSVLPAMNG DSTGQANHFL QAHVSENHGF QNGKDVDEHL RESSPGFDVL VDDELGDSDY  300
YHGEEQFGIK RGHDGRNLNS VNEYDLDCPT DYNSIADGDR ERFRDPRGYG PYDQMQGRYA  360
WDQHRASSER LLVGSAHSER RGYRKSDSPD HIDGSDLRHR LSKHRRGNGL RSIISNDYDG  420
HVEERKSRPR RDSQQLPSHE GSLSSRLRGR IKLPGGSSPV NSSDLRQERE ADRGRSRDRS  480
RDRLSPRRPQ IMSHQGRLRD RIQGRVQEDY NNEVRNFGVP RMRREIVDER STEFSHPKRL  540
SDLKGGVDAE IREHSYLGKP NNVKMDNNQL SEGDLSFEGP KPLSEILKRK REAEAAAASG  600
SRKRSSVNKQ RNNEKEGPVR NPGGSETGAI TMMHNSQSPV AKEETKSATT DAVGAENEKI  660
DVAPGQSSEG HNDGELETED GLIYDETLED HELDGEDQRE GEYDYEQGED GEYTYEEGEN  720
ADAEEEYLEE EDGDDFAKKI GVMFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	432	RKSRPRRD
2	473	483	RGRSRDRSRDR
3	515	524	RNFGVPRMRR