PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005124.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 291aa    MW: 31642 Da    PI: 8.2818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005124.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.72e-10801061541
                                HHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                     SRF-TF  15 kRrngilKKAeELSvLCdaevaviifs 41 
                                kR++g+lKK  E+  LCd+++avii+s
  Rmu_sc0005124.1_g000012.1  80 KRKKGLLKKVGEITSLCDIKAAVIIYS 106
                                9*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MYSQRRLGSI CRLRNIKAFA FTLLDGSSSL GLLLLGGGGG GGNSEGGTDT EGSGYCATGV  60
GQDRAGQRGD VSRKASPSRK RKKGLLKKVG EITSLCDIKA AVIIYSLFDV EPDVFPSHPE  120
VHELLTKFGD MPQMDKTRKM IDLETFLPQR IDKVWEQVKK QKRDNREKEI TQAMFGCLKG  180
RTLFDLEMKD MLDLNFIIQL NLREVESSSE CIWGGNQQRC GAVTTPLSRD GGTNNGADAI  240
PDDVRCSSEA TPTTIIPAST LVRGHHEPAT ATNDGLPAPT NPASAKMVQR L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-28M-type_MADS family protein