PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005017.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 371aa MW: 43116.9 Da PI: 6.5095

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005017.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	4e-56	7	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL+ +++++ewyfFs++dkky+tg+r+nratk+g+Wk Rmu_sc0005017.1_g000005.1 7 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQ--GTEDQNEWYFFSHKDKKYPTGTRTNRATKAGFWK 87 69**************************.9***********8..345788************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk+++ +++lvg++ktLvfykgrap+g+k+dW+mheyrle Rmu_sc0005017.1_g000005.1 88 ATGRDKAIYI-RHNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 131 ******.899***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKKIDLDVIR DVDLYKIEPW DLQGTEDQNE 60 WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYIRHN LVGMRKTLVF YKGRAPNGQK 120 SDWIMHEYRL ETNENGPPQE EGWVVCRVFK KRLATVRRMG DYESPCWYDQ GSSFMPELDS 180 PRTNMIPHPA YTTSSSSSYH HQLYSNCKQE LDHHLQYNAM PVPPHPDSFL QLPQLESPKV 240 AQYGTYDHHR NNGCHVMPSS TFRPEEQLQQ MNQQNLMINS SPLLYNDNSL DDQLTDWRVL 300 DKFVASQLSH DQQEASKETT TNYSNEAVFD PVGDEVHMNM GANESKRPEN NIGQDYAAST 360 STSSCQIDLW K

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKKIDLDVIR DVDLYKIEPW DLQGTEDQNE  60
WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYIRHN LVGMRKTLVF YKGRAPNGQK  120
SDWIMHEYRL ETNENGPPQE EGWVVCRVFK KRLATVRRMG DYESPCWYDQ GSSFMPELDS  180
PRTNMIPHPA YTTSSSSSYH HQLYSNCKQE LDHHLQYNAM PVPPHPDSFL QLPQLESPKV  240
AQYGTYDHHR NNGCHVMPSS TFRPEEQLQQ MNQQNLMINS SPLLYNDNSL DDQLTDWRVL  300
DKFVASQLSH DQQEASKETT TNYSNEAVFD PVGDEVHMNM GANESKRPEN NIGQDYAAST  360
STSSCQIDLW K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-137	NAC family protein