PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005014.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 675aa    MW: 75001.4 Da    PI: 6.3378
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005014.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.1e-22126226198
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +g
  Rmu_sc0005014.1_g000017.1 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAG 207
                                99****************************964333..4459****************************************** PP

                                -EEEEEE-SSSEE..EEEEE- CS
                         B3  78 DfvvFkldgrsefelvvkvfr 98 
                                D ++F   + +++el+v+v+r
  Rmu_sc0005014.1_g000017.1 208 DAFIFL--RGDTGELRVGVRR 226
                                ******..3489999***997 PP
2Auxin_resp108.38e-36252334183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  +  W nS+WrsLk
  Rmu_sc0005014.1_g000017.1 252 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNASPGWANSEWRSLK 334
                                789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    
MALSASNHPS GVSRPGTSDA LFRELWHACA GPLVTLPREG ERVYYFPQGH MEQLEASMHQ  60
MSEQQMPSFN LPSKILCKVV NVQLRAEPET DEVYAQVTLL PETDQSEVTS PDPPLSEIPR  120
CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGDTGEL RVGVRRLMRQ PSNMPSSVIS  240
SHSMHLGVLA TASHAIATGT LFSVFYKPRT SRSEFLVSVN KYLEARSHKL SVGMRFKMRF  300
EGEEVPERRF SGTIVGVGDN ASPGWANSEW RSLKVQWDEP SSILRPDRVS PWELEPLVAT  360
TPLNSQPALR NKRARPPVLP SSSPDLSALG EWKSQVESPS AFSYNDPQRG RDLYPSPKYS  420
SASKANSLCF KGNNSLAAVS ANPMFWSNRV EAVTESFSPV MRDSVERKQS TGNGYRLFGI  480
QLLDNSNVEE TLPMVVSGKL GDVQPISSFD AESDQHSEPS NVNRSDLPSG SCDAEKSSLR  540
SPQESQSRQI RSCTKVHMQG IAVGRAVDLA RFEGYEDLLK KLEDMFDIEG ELSGSTKKWQ  600
VVYTDDEDDM MMVGDDPWHE FCSMVRKIFI YTVEEVKRLS PKIKLPVGGE AKQGKPDSEA  660
AINAEDGSSI MGTAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein