PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004988.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 338aa    MW: 36914.4 Da    PI: 9.1123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004988.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-15242337699
                                ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                +++++l +g l l  +f++e+     +  +++++l+ ++g++W+ k+++  + +++   + +GW +F+ +n+L++gD + ++l+
  Rmu_sc0004988.1_g000026.1 242 MQPSYLLRG-LKLNATFVNENicA--TGATRKIKLQIPNGKTWSAKCSVylCMNKDYAKICSGWTKFAAENKLQVGDACALELI 322
                                556666666.9999*******662..445668***************87787777778899*********************** PP

                                SS.SEE..EEEEE-S CS
                         B3  86 gr.sefelvvkvfrk 99 
                                ++  + +++v++fr+
  Rmu_sc0004988.1_g000026.1 323 KEcPKLTFLVHIFRA 337
                                *************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MFAVDCFIST NSKFGELYKL QAWSEHEPPH GSLYADVSVG QGADMAVGAS DGRFGRFPAG  60
SWGGASGSGL LGSSSSMCEP LNLARPEVVG ISWLRCYRMG GGILKSVLGM TRYNGFDSGN  120
AVKYGGWLLD VAVMRATGRT GRVDWNDARR KSSAKGVASP SFFKVVVDEV LEDGMLEIEG  180
YVARNYEDFL GCSVVLTDPK GSMWPMELKR SNGSVWLKNG GDEAFTRAKR FKSNHPCLAV  240
RMQPSYLLRG LKLNATFVNE NICATGATRK IKLQIPNGKT WSAKCSVYLC MNKDYAKICS  300
GWTKFAAENK LQVGDACALE LIKECPKLTF LVHIFRAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09B3 family protein