PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004975.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35680.9 Da    PI: 8.512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004975.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-19145199256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Rmu_sc0004975.1_g000005.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 199
                                788899***********************************************98 PP
2HD-ZIP_I/II129.51.4e-41145234191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev
  Rmu_sc0004975.1_g000005.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEV 228
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eLr +l
  Rmu_sc0004975.1_g000005.1 229 QELR-AL 234
                                ***9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MMVQREDLGL SLSLSAFPHQ NHNPNSNNNN NNNNLQLNLM PSLVPTSSSS PHSGFNPQKP  60
SWNDALASSD RNSDTCRAAA RSFLRGIDVN RLPSTGDCED VSSPNSTVSS VSGKRSEREA  120
NGEDLDLERD GSRGMSDEED GETSRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKQL  180
GLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCENLTEE NRRLQKEVQE LRALKLSPQF  240
YMQMTPPTTL TMCPSCERVA VPPNSTSPSA TIDPRAQHHH HPMVPVHHPR AIPVAGPWAA  300
AAPIPQQQRP FDAFRAARP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150SRKKLRL
2194202RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-92HD-ZIP family protein