PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0004964.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 25575.4 Da PI: 4.7389 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.5 | 6.2e-15 | 48 | 107 | 4 | 57 |
-SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+ ql++L+el++ ++p+ e+++ + +l +++ ++V++WFqN +a+e++ Rmu_sc0004964.1_g000012.1 48 RWAPTPAQLRILQELYYDrgLKNPNPEQIQGICLHLkpygQIENKNVFFWFQNLKARERQ 107 9***************9657**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 94 | 1.3e-30 | 46 | 108 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Ptp Q++iL+ely+ +Gl++Pn e+iq i +L+ yG+ie+kNVf+WFQN kaRerqk Rmu_sc0004964.1_g000012.1 46 NIRWAPTPAQLRILQELYYdRGLKNPNPEQIQGICLHLKPYGQIENKNVFFWFQNLKARERQK 108 67***************9879*****************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence |
MEPRTLQLME LQTQQHMELQ QQQPTEEGES NQAAGSSANT PIRPTNIRWA PTPAQLRILQ 60 ELYYDRGLKN PNPEQIQGIC LHLKPYGQIE NKNVFFWFQN LKARERQKLK EIRNVRVGGS 120 LDLKFGSTSS TEGGRSIDLN FGCTDSTGDD GSIDLTLGLR SFMERRGGDH QEVETLPLFP 180 EHGENVLGNL KTTSEEGSAF GYYSGGSGGY NSGSPVSLEL SLNLSGVIDL D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-21 | WOX family protein |