PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004889.1_g000025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 28427.8 Da PI: 6.7093 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.1e-42 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq Rmu_sc0004889.1_g000025.1 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGLISILQ 91 7*********************************************************************************** PP DUF260 85 qqleqlkaelallke 99 ++l+ql+++l +k+ Rmu_sc0004889.1_g000025.1 92 NRLKQLQTDLYNAKK 106 *********988876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH 60 REDAVTSLAY EAEARLRDPV YGCVGLISIL QNRLKQLQTD LYNAKKDLST YIGPQALMIP 120 VFHPQQPEMN GGGTMSVPML GVPTGPQQGG LAGGQLVIRD QQQQQQMFEA QQQELVRFNV 180 NGMDNGNGFN QMAGGGGSGG GGSNGVVSAG SLGLGGFDNN AFNNQMQAAA AAHHHQHSLD 240 YQLQAQLMLQ PQQQSQPKSE GEES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-67 | LBD family protein |