PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004889.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 892aa    MW: 98692.9 Da    PI: 6.4461
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004889.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24127228199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Rmu_sc0004889.1_g000010.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 208
                                99*****************************8544444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Rmu_sc0004889.1_g000010.1 209 DSVLFI--WNEKNQLLLGIRRA 228
                                ******..8899999****997 PP
2Auxin_resp116.22.8e-38253336183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaast+s F+++YnPras+seFv++++k+ ka++ + vsvGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  Rmu_sc0004889.1_g000010.1 253 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTCVSVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 336
                                79*********************************95679*****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    
MRLSSAGFSP QPQEGEKRVL NSELWHACAG PLVCLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT CVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDAARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFTGMRED DLSMNTPLMW LRGDTGDRGI QSLNYHGIGV  420
TPWMQPRLDA SMIGLQTDMY QAMAAAALQE MRAVDPSKSL HTSLLQFQQT QNLPSRSAAL  480
MQPQMVQESQ SQPAFLQGVQ ENHRQSHSQT PTQSHLQHQL QHQNSFSNQQ QQLLDHQQIP  540
SAVSSMNHFA SASQSQSPSL QVITSLCQQQ SFSDSNGNPA TSTILSPLQS LMGSFSQDES  600
SNLLNMPRTN SLISSSGWPS KRAAIEPLLS SGVSQCVLPQ VEQLGPPQTT ISQNPISLPP  660
FPGRECSIDQ EGSTDPQTHL LFGINIESSP LLMQNGMSNL RGVGSDSDST TVHFPSNYMS  720
TTGTDFSLNP AVTPSSCIDE SGFLQSSENV GHENPPNGNF VKVYKSGSFG RSLDITKFSS  780
YHELRSELAR MFGLEGELED PVRSGWQLVF VDRENDVLLL GDDPWPEFVN SVWCIKILSP  840
QEVQQMGKRG LELLKSVPMQ RLSGNSCDEY GGSRQDSRNL SSGITSVGSL EY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein