PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004825.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 206aa    MW: 23666 Da    PI: 9.5393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004825.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51141381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWk
  Rmu_sc0004825.1_g000003.1  14 LPPGFRFHPTDEELVLQYLKRKVYSCPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWK 93 
                                79****************************.89***************54...46799************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Rmu_sc0004825.1_g000003.1  94 ATGLDKQIVASrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                                ********99857778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MEKLSFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVYSCP LPASIIPEVE VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLVL AEDKNNSTTQ SPVPVNNWVL CRIFLKKRGS GKNEEELVQV  180
QACNVDRVAK NPRITRPVFY DICDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-98NAC family protein