PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004799.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 382aa    MW: 42080.7 Da    PI: 7.3564
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004799.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.71.5e-25141243199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +g
  Rmu_sc0004799.1_g000003.1 141 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGGVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAG 222
                                89*********************999****985444444..9****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+vvF++++ +++e++v+v+r+
  Rmu_sc0004799.1_g000003.1 223 DSVVFMRSS-RGGEMYVGVRRT 243
                                ******765.8999*****996 PP
2Auxin_resp90.23.7e-30285368183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a++ ++FevvY+P+a++++Fvvk+e vekalkv +++GmR+kma+et+dss+ ++ +Gt ++    ++  W++S+Wr+L+
  Rmu_sc0004799.1_g000003.1 285 AAEMAAQDMPFEVVYYPKAGWADFVVKAEVVEKALKVFWTAGMRVKMAMETDDSSRMTWfQGTLSSAFVPENGPWKGSPWRMLQ 368
                                688999****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MPPNSHRHTR SRSHSHSHAP PPPQLVSIDP KIWRACAGNS VTIPTLHSRV YYFPQGHLEH  60
STSSSSAPVL LSPLVLSQPL ILCRIAAVQF LADPTTDEVL AKLLLHPVHS GLSPHHRELS  120
AAAAEEEQEE DDDGGDRVVS FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQAEPPVQT  180
LSVTDLHGGV WDFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRS SRGGEMYVGV  240
RRTVRASAGG DCGRWSSHIG LKSEEERSGG DGFKTRLSAE AVAEAAEMAA QDMPFEVVYY  300
PKAGWADFVV KAEVVEKALK VFWTAGMRVK MAMETDDSSR MTWFQGTLSS AFVPENGPWK  360
GSPWRMLQVF HFSPQLLALN LH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-115ARF family protein