PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004786.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 493aa MW: 54995.2 Da PI: 8.5854 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.9e-06 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Rmu_sc0004786.1_g000006.1 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Rmu_sc0004786.1_g000006.1 132 WVCEKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MLANNSSSSV PCSEPFSCLE NGINNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRLRPESQ AVVLQPPACL SRTASSPSPS SETNFSSRTT PNWPSASALV VPKPAHDNTK 240 LILSSPPAGH GISDRNRNSS KDINANSLYN LDLQLATTSN DNNPNHIEVS VSSSKRDVEN 300 HSTQLQLSIG SCDNFGDHHH PKNINIESNR NSPRESSTST NEHHHQQMKP AGESASTSRI 360 IKEEAREQLR LALAEKAYAE EARQQAEQQI ELAEQEFANA KRIRQQAQAE LDKAQALKEH 420 AVKKINSTIL QITCQACKQQ FQARARQANP HENSLAFSYM SSALTTTTTE GDQLEINASA 480 TRTDDRANSS AKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-112 | C2H2 family protein |