PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004708.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 337aa    MW: 38035.9 Da    PI: 8.5227
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004708.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-5281321128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv++yL++k++++++++  +i+e+d+yk++Pw+Lp  +  +ekewyfFs+rd+ky++g+r+nra+ sgyWk
  Rmu_sc0004708.1_g000008.1   8 LPPGFRFHPTDEELVKHYLCRKCQSQPISV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWK 90 
                                79****************************.88***************6555679***************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg dk++     + vg+kk Lvfy g+ap+gekt+W+mheyrl
  Rmu_sc0004708.1_g000008.1  91 ATGADKPIGL--PKPVGIKKALVFYAGKAPRGEKTNWIMHEYRL 132
                                ********99..789***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MSSSELQLPP GFRFHPTDEE LVKHYLCRKC QSQPISVPII AEIDLYKYDP WELPGLALYG  60
EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGL PKPVGIKKAL VFYAGKAPRG  120
EKTNWIMHEY RLADVDRTPR KRNSLRLDDW VLCRIYNKKG TAEKQQPPMS RKAVSGGSEF  180
EDVKPENLMV CPPPPAVAAT RPSEYVYFDN SDSVPRLHTD SSCSEQVVSP EFTSEVQSEP  240
KWKEWEKALD FPYNYGDATV ENGGFGAQFQ GGNQMSPLQD IFIRALRRRF PDKGGRDFDL  300
GLDGGRVGFS YFGLSCGRRP WLASGLQGGG DRSQFLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-146NAC family protein