PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004677.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 742aa MW: 81875.8 Da PI: 6.1283

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004677.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	206	224	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+a+ G+C +G +C+F+H Rmu_sc0004677.1_g000020.1 206 CDFYAK-GWCIRGTSCRFIH 224 ****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MSASDDAQSL ALAQLSDDDD DEDPEELEQV DQELEEQRDE VDMDISNSPI QAHHRDDRRE 60 DIKFEGIGGH SGPGSSTWGK SEARPPSNTL DMEESTSNSN FSGTSNEPLR LKSQKTFAGA 120 GECRSQEFAE NDARILSGKK TSTHHTESHT NVNNVINSED EMKQVVQSTN DRKKMESRSA 180 ASEIGTHITS PLAETNDPNK RPAIVCDFYA KGWCIRGTSC RFIHTKDSPK NSHPQPEGDV 240 AAASCSREVK VDEGPRGIHE RSRLPGFHDP LASSSGNGFP FSSHLGIPRR HQFQSVQREE 300 SNVGDSADVQ KLHLPKDDLA FPTSYKDVGK DGFNNSPNKK GRYSIGNTSS HSSSMEDLAG 360 VWRQRVHSDH TSPLVSHSLN SSNTLIATGL FPSSRISTWN GFSLPASYSS LDANPLGSKK 420 LLDSNRDYHA YTRSSAFLKS SSPFTSSELS NFPPISISQH SAELKTKISS NNWEPSVPFR 480 PSFILPSDFL SFSAKQYDPL RGSIELPKLA NNSFEAFYSE GATVGNRLHQ KVLPETVSGT 540 LPPACDADTN SMSSHNTYHE KVLDNSCYTR DPNSPVTEAE TVGTSVVYQN GTLTKDENPL 600 GHSQVKGSTN PNKISIYGDS RQKSDGSSQQ RDIKVDRFRE NNEAEVEHLT DGDVQQESKE 660 MRQFRAALIE LVKELLKPKW REGSLSKDAH NKIVKKAVDK ILSAFQPQQI PPTVEAVTQY 720 LSACRPKISK LVEGYIERYG KS

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MSASDDAQSL ALAQLSDDDD DEDPEELEQV DQELEEQRDE VDMDISNSPI QAHHRDDRRE  60
DIKFEGIGGH SGPGSSTWGK SEARPPSNTL DMEESTSNSN FSGTSNEPLR LKSQKTFAGA  120
GECRSQEFAE NDARILSGKK TSTHHTESHT NVNNVINSED EMKQVVQSTN DRKKMESRSA  180
ASEIGTHITS PLAETNDPNK RPAIVCDFYA KGWCIRGTSC RFIHTKDSPK NSHPQPEGDV  240
AAASCSREVK VDEGPRGIHE RSRLPGFHDP LASSSGNGFP FSSHLGIPRR HQFQSVQREE  300
SNVGDSADVQ KLHLPKDDLA FPTSYKDVGK DGFNNSPNKK GRYSIGNTSS HSSSMEDLAG  360
VWRQRVHSDH TSPLVSHSLN SSNTLIATGL FPSSRISTWN GFSLPASYSS LDANPLGSKK  420
LLDSNRDYHA YTRSSAFLKS SSPFTSSELS NFPPISISQH SAELKTKISS NNWEPSVPFR  480
PSFILPSDFL SFSAKQYDPL RGSIELPKLA NNSFEAFYSE GATVGNRLHQ KVLPETVSGT  540
LPPACDADTN SMSSHNTYHE KVLDNSCYTR DPNSPVTEAE TVGTSVVYQN GTLTKDENPL  600
GHSQVKGSTN PNKISIYGDS RQKSDGSSQQ RDIKVDRFRE NNEAEVEHLT DGDVQQESKE  660
MRQFRAALIE LVKELLKPKW REGSLSKDAH NKIVKKAVDK ILSAFQPQQI PPTVEAVTQY  720
LSACRPKISK LVEGYIERYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-37	C3H family protein