PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0004598.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 257aa MW: 28007.6 Da PI: 4.5491 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.4e-17 | 47 | 107 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t+ ql++L+ l++ ++yp+ e+++e+ +l ++++++V++WFqN +a++++ Rmu_sc0004598.1_g000010.1 47 NRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLklygQIEDKNVFFWFQNLKARDRQ 107 7****************9557*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 93 | 2.8e-30 | 45 | 108 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtPtp Q++iL+ ly+ +G + P+ e+iq+i +L+ yG+iedkNVf+WFQN kaR+rqk Rmu_sc0004598.1_g000010.1 45 TTNRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKLYGQIEDKNVFFWFQNLKARDRQK 108 579***************9889*****************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence |
MEPRTLQLIE LQTQQQMELQ AQQQVEDGGN NQAAGSSANT PIRPTTNRWT PTPAQLRILQ 60 GLYYDKGHKY PTPEQIQEIC LHLKLYGQIE DKNVFFWFQN LKARDRQKLK EFRKVRVGGS 120 LDLNFGSTSS TDDGRSIDLN FGSTGSTGDD RSIDLTFGSC VGYGVDPYSS SPFNTNTRTT 180 SFGTTGGQSS MEQQGGDHQE VETLPLFPEH GEDVLGNPKT TSEEGSAFGY YSGGSGGYNS 240 GSPVSLELSL NPSGAAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 6e-21 | WOX family protein |