PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004571.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 405aa MW: 45006.4 Da PI: 10.2711

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004571.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.7	1.5e-16	78	139	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L+el++ +yp+ e+++e+ l ++++++V++WFqN +a+ek+ Rmu_sc0004571.1_g000018.1 78 STRWTPTPDQIRILKELYYDkeIKYPTPEQIQEIYLYLkqygQIEDKNVFFWFQNLKAREKQ 139 58**************95459***********************************97 PP
2	Wus_type_Homeobox	93.6	1.8e-30	77	141	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPtp+Qi+iL+ely+ + ++ P+ e+iq+i L++yG+iedkNVf+WFQN kaRe+qk+ Rmu_sc0004571.1_g000018.1 77 SSTRWTPTPDQIRILKELYYdKEIKYPTPEQIQEIYLYLKQYGQIEDKNVFFWFQNLKAREKQKK 141 689*************98799**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MNYTKNISEI RPIGPPPTAT VRALIRDKPL HGPPATTYLF RDLRKSDLLS AKVVCHNTSR 60 FVMFPYMLPT HQQPFSSSTR WTPTPDQIRI LKELYYDKEI KYPTPEQIQE IYLYLKQYGQ 120 IEDKNVFFWF QNLKAREKQK KRLNRNVRVP MGTSSSGVGG SIHLNFGSTS STDDGGSIDL 180 NFGSAGSTGA DGSIDLNFGS WIPDPTRAVN LESLIFRSTL KIVMQGGYED DQGEEEIPKL 240 RRIGLCNAGI GDLRLGRVSH GWGVFDPRLG AAAQQGSGTG HSESGEGQVV AGGRRRREMG 300 PGRVTRVAQK GSKRFVEVYV KLKLAGFWKN SGHLDCSRKV VKLDEMKRSS PTPTSWAVVG 360 GGSATKSGGL FRPPPGTLRE VSAYFYVLHV KTIILIYYTK FLDIV

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MNYTKNISEI RPIGPPPTAT VRALIRDKPL HGPPATTYLF RDLRKSDLLS AKVVCHNTSR  60
FVMFPYMLPT HQQPFSSSTR WTPTPDQIRI LKELYYDKEI KYPTPEQIQE IYLYLKQYGQ  120
IEDKNVFFWF QNLKAREKQK KRLNRNVRVP MGTSSSGVGG SIHLNFGSTS STDDGGSIDL  180
NFGSAGSTGA DGSIDLNFGS WIPDPTRAVN LESLIFRSTL KIVMQGGYED DQGEEEIPKL  240
RRIGLCNAGI GDLRLGRVSH GWGVFDPRLG AAAQQGSGTG HSESGEGQVV AGGRRRREMG  300
PGRVTRVAQK GSKRFVEVYV KLKLAGFWKN SGHLDCSRKV VKLDEMKRSS PTPTSWAVVG  360
GGSATKSGGL FRPPPGTLRE VSAYFYVLHV KTIILIYYTK FLDIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	323	RRRREMGPGRVTRVAQKGSKRFVEVYVKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	6e-26	WOX family protein