PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004565.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 312aa    MW: 35438.1 Da    PI: 4.9904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004565.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2066119356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  Rmu_sc0004565.1_g000009.1  66 KKRRLTAEQVHLLEKSFETDNKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 119
                                56789************************************************9 PP
2HD-ZIP_I/II134.63.4e-4365156192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl++eqv+lLE+sFe+++kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+
  Rmu_sc0004565.1_g000009.1  65 EKKRRLTAEQVHLLEKSFETDNKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLANYDSILKEN 148
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++L++e+ 
  Rmu_sc0004565.1_g000009.1 149 QKLKSEVV 156
                                ****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MEPGRLFFEP QQGGGGNMLF LGSGDHVFRG PRSIIGMEET SRRRSFFSTQ EELYEEEYYD  60
EQMPEKKRRL TAEQVHLLEK SFETDNKLEP DRKTQLAKKL GLQPRQVAVW FQNRRARWKT  120
KQLERDYDVL KASYDSLLAN YDSILKENQK LKSEVVAITE KLEAKDQEEK GAAFAGDHHH  180
HDEKRLPGHL LPGEKEMITD VNVPMSLQFD VKVEDRLSSG SGASAVVDEE GPQHVDSGDS  240
YFPSSSDVHN YPPPHPPHDH HHCMGLVGGV HSEDDGSDDG RSYFSDVFAA AAAEQQQQQP  300
EDGVSMGWWV WS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-85HD-ZIP family protein