PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004533.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 164aa    MW: 18609.9 Da    PI: 6.1472
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004533.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.33.5e-5124117396
                      NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                                + d++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kcq+ekrkt+ngdd++walatlGf++y+ pl+ y
  Rmu_sc0004533.1_g000006.1  24 QPDQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASHKCQKEKRKTVNGDDICWALATLGFDNYAGPLRRY 107
                                5699******************************************************************************** PP

                      NF-YB  87 lkkyrelege 96 
                                l++yr+ eg+
  Rmu_sc0004533.1_g000006.1 108 LHRYRDQEGA 117
                                ******9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MVDNIGGSAP NICDHGQGDI KTEQPDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV  60
SEFISFVTGE ASHKCQKEKR KTVNGDDICW ALATLGFDNY AGPLRRYLHR YRDQEGAEHI  120
ANDNNNNEDK LKLLVNNILS TDQEQRIIMI MNQYDHPHHD IQKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-54NF-YB family protein