PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004443.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 529aa    MW: 58842.1 Da    PI: 6.3072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004443.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.39.4e-1161555281374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal 81 
                                lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ + k+   ++++  al
  Rmu_sc0004443.1_g000019.1 155 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDKKEEAL 238
                                689***************************************************9666666666777777777789999999** PP

                       GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeele 159
                                +l +e++P ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+q+La+R+++pp  +lRiTgvg      +++l 
  Rmu_sc0004443.1_g000019.1 239 RLVYEICPHIQFGHFVANSSILEALEGESFVHVVDLGMTlglpHGDQWQGLIQSLATRAGQPPvsRLRITGVGL----CADRLL 318
                                ***********************************99873333667*************9999899********....****** PP

                       GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                 +ge L+ +A++lg+++ef+  v+++le+l++e++++ +gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+ve
  Rmu_sc0004443.1_g000019.1 319 IIGEELEAYADSLGINLEFSC-VESNLENLKPEDIKIFEGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKILVLVE 398
                                *********************.79*******************************88877777...8***************** PP

                       GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                q+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+ +
  Rmu_sc0004443.1_g000019.1 399 QDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQGA 482
                                ************************************************************************************ PP

                       GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                p++  +++qak  l k k  +gy+v ee+g+lvlgWk+rp+v++S+W+
  Rmu_sc0004443.1_g000019.1 483 PIK--MMAQAKQWLGKNKvCEGYTVVEEKGCLVLGWKSRPIVAASCWK 528
                                *96..789**********9****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MARSRSFMTE YECTNHEIRT NRMSGLELLG LNNHSSMACY SYPYMSSLEE GSANDSSLIN  60
PYSDHESRDH KKLKRTQSIA DSVSSNSSIN SSIISRSSST NSLTTLPRLH FRDHIWTYTQ  120
RYLAAEAVEE AAVAMINAEE NGAEQEDGTA DGMRLVQLLI ACAEAVACRD KSHASALLSE  180
LRANALVFGS SFQRVASCFV QGLASRLALV QPLGAVGFVP SKLNAKDYAL MDKKEEALRL  240
VYEICPHIQF GHFVANSSIL EALEGESFVH VVDLGMTLGL PHGDQWQGLI QSLATRAGQP  300
PVSRLRITGV GLCADRLLII GEELEAYADS LGINLEFSCV ESNLENLKPE DIKIFEGEVL  360
VVNSILQLHC VVKESRGALN SVLQMIHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
GAPIKMMAQA KQWLGKNKVC EGYTVVEEKG CLVLGWKSRP IVAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-81GRAS family protein