PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004404.1_g000018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 295aa MW: 33818 Da PI: 9.9755 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.6 | 5e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kRr+g++KK +EL +LCd++++ ii+ + Rmu_sc0004404.1_g000018.1 11 ITNDSARKATYKKRRKGLMKKVSELTTLCDIDACAIIYCP 50 89***********************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MTRKKVKLTY ITNDSARKAT YKKRRKGLMK KVSELTTLCD IDACAIIYCP YDSQPEIWPS 60 PLGVQRVLAQ FKTMPEMEQS KKMVNQETFL RQRINKAQEQ LKKQKKDNRE KEMARVMFQS 120 LTGKSLRGFT LSELTDLGWV IDQHLKELHL RMKNIKEEAV KSQNQVQGAQ GVSAAATEHR 180 MVAMKSNGEG SSSNMAMKTG EESSNMQHAA LNRQVFDHMH NMEAMQLQMM QMAAQKQQNP 240 WFMDMMNAPL PTPLPHPDHH QHMGFTGEDM MVPFADHNHN TMWPNPPPAG GFNFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLTYITNDSARKATYKKRR |
2 | 22 | 26 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-58 | M-type_MADS family protein |