PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004329.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 686aa MW: 74148.7 Da PI: 8.7195

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004329.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	38	61	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Rmu_sc0004329.1_g000008.1 38 KSKPCTKFFSTAGCPFGESCHFLH 61 7789******************** PP
2	zf-CCCH	24.8	3.7e-08	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Rmu_sc0004329.1_g000008.1 102 KTRLCNKYNSAEGCKFGDKCHFAHGE 127 8***********************96 PP
3	zf-CCCH	35.8	1.3e-11	269	293	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+t+lC++fa+ GtC +G+rC+FaHg Rmu_sc0004329.1_g000008.1 269 YRTKLCDNFAK-GTCTFGERCHFAHG 293 89*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MMDTRKRGRN EAGGLHANGG FKKNKQELDS LSTGVGSKSK PCTKFFSTAG CPFGESCHFL 60 HYVPGGYNAV AQVMNLAPPP QSSRNFAGPP SHSNGSSAPS VKTRLCNKYN SAEGCKFGDK 120 CHFAHGEREL GKPVSQSYGH DDPRAVAPAP GHMGNWMEPG HAPLQGPASS FGASSTAKIS 180 VDASLAGAII GKGGVNSKHI CHQTGAKLAI RDHESDPNLR NIELEGTFEQ IQQASALVRE 240 LIQSVLMSGP NKTPGRGGPG APAPPGSNYR TKLCDNFAKG TCTFGERCHF AHGAAELRKP 300 GVVRLNRRDE PLLFRKGSNL SLSFGFSPME FGAYKRDSSL SLGKDITHQH PGTELCLSRL 360 ASISIQLMAS SSSPQPDIPF VDEGIIEAMS VCFEEMLTFV DIEDDISLWV SSLLTRNLEL 420 EENLGAFDCD RASLAHNSIP DGDGSSELCQ SGPSWSLRDM SLSLRRLQRP RIPLNGPQLW 480 DRDAYRTFFR NGSVTLALGG LSLNKGSWAD PECIPPWAFK NKIEFYNANP HFPMPAKLDN 540 YDETVASCPK AKTASLIEIE PTNMTKSQLE VDTTQPSKVK RKRKQKKVQE HCREPKTVTK 600 QTKVVHSLGL RLSTNGARGR GRGRRGRGKG RGVGDSVKVC SSTGILVETG NMTSDSHPLE 660 TVLETKQLDR ATDGMEDLTP LHGCGG

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MMDTRKRGRN EAGGLHANGG FKKNKQELDS LSTGVGSKSK PCTKFFSTAG CPFGESCHFL  60
HYVPGGYNAV AQVMNLAPPP QSSRNFAGPP SHSNGSSAPS VKTRLCNKYN SAEGCKFGDK  120
CHFAHGEREL GKPVSQSYGH DDPRAVAPAP GHMGNWMEPG HAPLQGPASS FGASSTAKIS  180
VDASLAGAII GKGGVNSKHI CHQTGAKLAI RDHESDPNLR NIELEGTFEQ IQQASALVRE  240
LIQSVLMSGP NKTPGRGGPG APAPPGSNYR TKLCDNFAKG TCTFGERCHF AHGAAELRKP  300
GVVRLNRRDE PLLFRKGSNL SLSFGFSPME FGAYKRDSSL SLGKDITHQH PGTELCLSRL  360
ASISIQLMAS SSSPQPDIPF VDEGIIEAMS VCFEEMLTFV DIEDDISLWV SSLLTRNLEL  420
EENLGAFDCD RASLAHNSIP DGDGSSELCQ SGPSWSLRDM SLSLRRLQRP RIPLNGPQLW  480
DRDAYRTFFR NGSVTLALGG LSLNKGSWAD PECIPPWAFK NKIEFYNANP HFPMPAKLDN  540
YDETVASCPK AKTASLIEIE PTNMTKSQLE VDTTQPSKVK RKRKQKKVQE HCREPKTVTK  600
QTKVVHSLGL RLSTNGARGR GRGRRGRGKG RGVGDSVKVC SSTGILVETG NMTSDSHPLE  660
TVLETKQLDR ATDGMEDLTP LHGCGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	579	586	VKRKRKQK
2	622	632	RGRRGRGKGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-85	C3H family protein