PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004318.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 234aa    MW: 26359.8 Da    PI: 9.0561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004318.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.2e-49141381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp      e+e yfFs++++ky++g+r+nr+t+sgyWk
  Rmu_sc0004318.1_g000022.1  14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCLYDPWDLPGD---LEQERYFFSNKESKYPNGNRTNRVTSSGYWK 93 
                                79****************************.89***************54...46799************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+++s  +++ vg kk+Lvfy+g+ap+g+ktdWvmhey+l
  Rmu_sc0004318.1_g000022.1  94 ATGSDKKIVSPrRNNIVGKKKSLVFYRGKAPNGSKTDWVMHEYSL 138
                                *********9867778***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MDKFNFVRNG MTRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCLYDPWDLP  60
GDLEQERYFF SNKESKYPNG NRTNRVTSSG YWKATGSDKK IVSPRRNNIV GKKKSLVFYR  120
GKAPNGSKTD WVMHEYSLVN NLGTTASSTE NPINQRGNWV LCRIFLKKRS CQKDEDILLS  180
YDGFKVKNAT KGQLQITSTN PVSSSSSCSS CSGITDISSS HEAGDEEISG CTKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-80NAC family protein