PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004250.1_g000041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 23506.1 Da PI: 6.7984 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 47 | 9.6e-15 | 58 | 105 | 26 | 73 |
TCP 26 aecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ ++f+d+qd LG+d++sk+++WL+++ak+a ++l ++++ ++ Rmu_sc0004250.1_g000041.1 58 VHITIQFYDVQDWLGYDRPSKAVDWLIKKAKAATDKLDVPWNQNSISV 105 6899********************************998855555333 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MPSVQASLVE VGGLLLPPPP VKSWRLKATF QGPPAGRTTT PRSAPPKAPG TTASGSQVHI 60 TIQFYDVQDW LGYDRPSKAV DWLIKKAKAA TDKLDVPWNQ NSISVQTTSS PMVPISAAQA 120 LHFSMVEAPS SLFANMRGAM VGTSRVAELV NQNSSNFLQV RMVWRPKLLI FVCLQLPLIE 180 VGLKAKVVGL TDEVVGEDGV EVVLHVENDG EDGGVGLEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 7e-16 | TCP family protein |