PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004241.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 334aa    MW: 35512.4 Da    PI: 7.0103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004241.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011129151123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC+ C + Fs++  L  H++ H
  Rmu_sc0004241.1_g000001.1 129 FKCNFCQRKFSTSQALGGHQNAH 151
                                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MKKPGAVEAC PLESQVASEV PPSPSSLPKE GGDGDDKSNM KMKEKVIVLI DEPQQSLEKE  60
KEAAVGGSTS SGVVHDMTPS NQGPPGGSNL ELALFNSSSS QLVPEVVEVE EGSDENPAAR  120
DQKKEPRVFK CNFCQRKFST SQALGGHQNA HKQERQLAKR RSQAFDHMGG LGHSHFPYYS  180
PYSGFSTHSL YGSYNRSSLG VRMDSMIHKP SYTPWSQTYG RFGLALGGAA SGLGGGASGW  240
SRPGSSLINS IDQHRLTSLQ GLQNNINELG LAGRTATAPR FEQGSTSGLQ NFGGSNLSAL  300
NNRVPPTNGA DLLRQAEPPQ CDTDGAGLDL SLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-22C2H2 family protein