PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004156.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 406aa MW: 45207.6 Da PI: 8.9916

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004156.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.7	4e-23	30	95	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ ++ + v l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg Rmu_sc0004156.1_g000008.1 30 RKQKSLGLLCSNFIALYDREGVTSVGLDDAAARL---GV--ERRRIYDIVNVLESVGVLSRKAKNQYTWKG 95 79***************999********.....****************************98 PP
2	E2F_TDP	72.4	4.9e-23	168	261	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse..................dvknkrRRiYDilNVLealnliek..... 61 r+eksL lltq+f+kl+ +s+ + ++l+e+a+ L+ + d+ k+RRiYDi+NVL+++nliek Rmu_sc0004156.1_g000008.1 168 RREKSLALLTQNFVKLFVCSTVESISLDEAARLLLGDahnasvmrraetlafsllDEAAKVRRIYDIANVLSSMNLIEKthtad 251 689**************************************************8889********************* PP E2F_TDP 62 kekneirwkg 71 ++k++++w g Rmu_sc0004156.1_g000008.1 252 TRKPAYKWLG 261 9*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MESAAPPPPP PPPPPPPQPE TASRHHAYSR KQKSLGLLCS NFIALYDREG VTSVGLDDAA 60 ARLGVERRRI YDIVNVLESV GVLSRKAKNQ YTWKGFGAIP IALQDLKEEG LKENFNTFHG 120 NLQGNDDPKC SQGSDDEEGD ESGPATGSQN ENPGVHPKSS GNSKNDNRRE KSLALLTQNF 180 VKLFVCSTVE SISLDEAARL LLGDAHNASV MRRAETLAFS LLDEAAKVRR IYDIANVLSS 240 MNLIEKTHTA DTRKPAYKWL GLKGKDAVSS ASDESRKRAF GTDITNVSCK RGKVESSTAG 300 KLEAQKQKLH ETTVRQRERR ESTVHKVDRN NLEDSKENTK SYQFGPFAPV TIARAGNFNM 360 KKVDWDNLSS TYRPQYQNQA LKELFSHYME AWKSWYSEVV EKPIQT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MESAAPPPPP PPPPPPPQPE TASRHHAYSR KQKSLGLLCS NFIALYDREG VTSVGLDDAA  60
ARLGVERRRI YDIVNVLESV GVLSRKAKNQ YTWKGFGAIP IALQDLKEEG LKENFNTFHG  120
NLQGNDDPKC SQGSDDEEGD ESGPATGSQN ENPGVHPKSS GNSKNDNRRE KSLALLTQNF  180
VKLFVCSTVE SISLDEAARL LLGDAHNASV MRRAETLAFS LLDEAAKVRR IYDIANVLSS  240
MNLIEKTHTA DTRKPAYKWL GLKGKDAVSS ASDESRKRAF GTDITNVSCK RGKVESSTAG  300
KLEAQKQKLH ETTVRQRERR ESTVHKVDRN NLEDSKENTK SYQFGPFAPV TIARAGNFNM  360
KKVDWDNLSS TYRPQYQNQA LKELFSHYME AWKSWYSEVV EKPIQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-136	E2F/DP family protein