PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004112.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 407aa MW: 45570.7 Da PI: 7.149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004112.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.3	4.7e-30	29	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp G++F+P+ ++l +yL+ kv++ ++++ vi+++++y ++P+dL+ ++++++ ++yfF++ +kk ++gk++nr+t +g+W Rmu_sc0004112.1_g000016.1 29 LPSGVKFRPSHKDLY-HYLHMKVHTGRIDFGGVIRSINLYIYKPEDLRgLAFDNDDGRLYFFTPLQKKFTKGKKTNRVTGHGFW 111 699*********9.**********999**********966788888899********************* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k t k+ ++++ +++ + +k+ L ++ +kg+kt+W+m++y+l Rmu_sc0004112.1_g000016.1 112 KVTQKSVKIMDDDNKPIMTKTPLCYFYFWGKKGRKTQWLMDQYKL 156 *********************999999**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MDNKKSSSSV LIALPSPIKE DEIEWKMSLP SGVKFRPSHK DLYHYLHMKV HTGRIDFGGV 60 IRSINLYIYK PEDLRGLAFD NDDGRLYFFT PLQKKFTKGK KTNRVTGHGF WKVTQKSVKI 120 MDDDNKPIMT KTPLCYFYFW GKKGRKTQWL MDQYKLINEG SNPVMLKNWV LCVVHYKSRG 180 NNDTNKRSST DSRSEAVGSS TQNSMIGSSS ESNPQISFGN NNFNVASSSN PQGTSSYPEP 240 VAFQTPSNPN KRQQCSTSYD EPLCITCPGN DIASYAQFPK RRSPSANDTP NIDQNQASDP 300 SFDQMVSNVL NQDPDEYTCL EPLLNLDIGD YEWKDDIFND LFPSELNPQN SNPNSMNPTT 360 TTTSHPTVSA SDPPPPTFNS SADENARIAS MAKVGQSNAT TSLSIDQ

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MDNKKSSSSV LIALPSPIKE DEIEWKMSLP SGVKFRPSHK DLYHYLHMKV HTGRIDFGGV  60
IRSINLYIYK PEDLRGLAFD NDDGRLYFFT PLQKKFTKGK KTNRVTGHGF WKVTQKSVKI  120
MDDDNKPIMT KTPLCYFYFW GKKGRKTQWL MDQYKLINEG SNPVMLKNWV LCVVHYKSRG  180
NNDTNKRSST DSRSEAVGSS TQNSMIGSSS ESNPQISFGN NNFNVASSSN PQGTSSYPEP  240
VAFQTPSNPN KRQQCSTSYD EPLCITCPGN DIASYAQFPK RRSPSANDTP NIDQNQASDP  300
SFDQMVSNVL NQDPDEYTCL EPLLNLDIGD YEWKDDIFND LFPSELNPQN SNPNSMNPTT  360
TTTSHPTVSA SDPPPPTFNS SADENARIAS MAKVGQSNAT TSLSIDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	4e-22	NAC family protein