PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004101.1_g000040.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 382aa    MW: 42815.5 Da    PI: 9.1645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004101.1_g000040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07210232123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C+ Cgk F+r  nL+ H+r H
  Rmu_sc0004101.1_g000040.1 210 HYCQVCGKGFKRDANLRMHMRAH 232
                                68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MYSMTGQDTV SSFSLEPDSS SSGAVLPQDQ NHSTSLLYSL SVLKEKVRQA KSLVGVLIAP  60
PDHHQSQQQQ QLPESTTMGA VASMNNVIQE IIVTASSMMF TCQQMALVAP GNDTRSEPNF  120
SISTAGRSNI RDATFYPTND QTLDWFSTEN YNNCPTRDVI SRSHGQVKTK EFPQRVETNN  180
ALQVQNLPPK NSSYDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSI  240
ALSNPLKNNN KQNSAVNIHG SSDAECSVKL PRKYSCPQEG CRWNQKHAKF QPLKSMICVK  300
NHYKRSHCPK MYVCKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR KDKLMGHVAL  360
FVGHTPVILS SNLPIRHGKA VN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-110C2H2 family protein