PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004086.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 353aa MW: 39832.5 Da PI: 6.4556

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004086.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.5	1.1e-38	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCa+Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn+lk+++++++++r++a++s+++e++a+ +dPv+G++gvi++l+ Rmu_sc0004086.1_g000003.1 13 ACASCKHQRKKCDSNCELAPYFPANKYHEFQNAHKLFGVSNILKIIASIEPHKRKAAAESILFEGNAWKSDPVHGCLGVIKDLT 96 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 q++ ++++l++++++ Rmu_sc0004086.1_g000003.1 97 AQMSFHEKQLSVVNQH 112 *********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDRESSPSPL NQACASCKHQ RKKCDSNCEL APYFPANKYH EFQNAHKLFG VSNILKIIAS 60 IEPHKRKAAA ESILFEGNAW KSDPVHGCLG VIKDLTAQMS FHEKQLSVVN QHLAFHKEQQ 120 KKEQEQDQSD FLNDELPDLP DELMEDMKIF EHGHNYWSNL VGADEEKPFD MEHTEAFDEQ 180 VNPLTYFNGQ AGECRAERDV DNYSKQKKTN WALPPPKNHH RPDPKENEGN GRPTVTDPAQ 240 NPSLKLGFPF KKPGDRSADS DTSTKAWPVS IAITNPVHQV VVILPSPRDR LVVNRRKSSD 300 QSLIRWQAIV PHSPTITLLS MERSSAPNLD SLTRDQQQKS EAAFLGTTPI SDA

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDRESSPSPL NQACASCKHQ RKKCDSNCEL APYFPANKYH EFQNAHKLFG VSNILKIIAS  60
IEPHKRKAAA ESILFEGNAW KSDPVHGCLG VIKDLTAQMS FHEKQLSVVN QHLAFHKEQQ  120
KKEQEQDQSD FLNDELPDLP DELMEDMKIF EHGHNYWSNL VGADEEKPFD MEHTEAFDEQ  180
VNPLTYFNGQ AGECRAERDV DNYSKQKKTN WALPPPKNHH RPDPKENEGN GRPTVTDPAQ  240
NPSLKLGFPF KKPGDRSADS DTSTKAWPVS IAITNPVHQV VVILPSPRDR LVVNRRKSSD  300
QSLIRWQAIV PHSPTITLLS MERSSAPNLD SLTRDQQQKS EAAFLGTTPI SDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-33	LBD family protein