PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004082.1_g000020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | SRS | ||||||||
Protein Properties | Length: 217aa MW: 23007.6 Da PI: 8.1632 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 100.1 | 4e-31 | 120 | 177 | 3 | 60 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 sg +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq + a Rmu_sc0004082.1_g000020.1 120 SGMRACKDCGNRAKKGCEYSRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAV 177 57789*********************************************98776665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MLGLRDILLI APNHSSVHQQ NQPISSDHPA LPLPSSTALG VGLGIFPLLT ATPCGQNAPT 60 ADGNPDNSRF WSLRTYPELN SSKQDMLSFG NHGAAESQQV AESDDGNVNG EGGGRGGEDS 120 GMRACKDCGN RAKKGCEYSR CRTCCRGRGY DCSTHVRSTW VPAARRRERQ MGVTVAVAGG 180 VASGGGGEGD SRSFVNIHLQ TTNRLGWSHN LVSRLCL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.3 | 1e-27 | SRS family protein |