PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004033.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 539aa    MW: 60581.9 Da    PI: 4.601
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004033.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.63.7e-1091615321374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaal 81 
                                lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+  +f+ +L++rl+  +  +l  +++  + + +    +e+l a+
  Rmu_sc0004033.1_g000010.1 161 LVHMLLACAEAVGCRDTRLADSLLTQIWASVSPFGDSLQRVSYCFAMGLKSRLSLlHNVNLNGTFNNDTMDVSLiaREEKLEAF 244
                                689**************************************************995555666666666666555888999**** PP

                       GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                                +l+++++P++ f++++aN+aI +a++g+e +HiiD+++++ lQWp+Ll++LasR+egpp +lRiTg+++   ++  el +  + 
  Rmu_sc0004033.1_g000010.1 245 QLLHQTTPYIAFGFMVANEAICQAAQGKESLHIIDLGMEHTLQWPSLLRTLASRTEGPPkKLRITGLVE--DHNVLELDAGMRV 326
                                *******************************************************888889********..5699999999*** PP

                       GRAS 165 LakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                L + A++lg+p+efn++ +  + + l+ e+L++++gEal Vn++++lh  ++es  + +   ++L+++k+l P v+++veq+a+
  Rmu_sc0004033.1_g000010.1 327 LVEEARSLGIPIEFNMISEPvKPSLLTKENLDLREGEALCVNSIMHLHMYVKESRGSLK---AILQAFKKLGPSVLTLVEQDAN 407
                                ****************744358999************************9977776666...9********************* PP

                       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                hn++ Fl rfle+l++ysa+fdsle++lpr+s +r+k+Er  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+ 
  Rmu_sc0004033.1_g000010.1 408 HNGPFFLGRFLESLHFYSAIFDSLEVSLPRNSPQRMKIERLHFADEIRNIVAFEGLNRVERHERADQWRRQLGRAGFQVMGLK- 490
                                *******************************************************************************9996. PP

                       GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  Rmu_sc0004033.1_g000010.1 491 -CTSQARMMLSVYGCDGYSLASEKGCLLLGWKGRPIMLASAWQ 532
                                .679**************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MEDFNAWLSF PIHGSLNHDL AIRRFCPARL EQEQGGGEWE EILNEIQFCS PSEDSTSTPC  60
LPASEVDEFV DSFINMDHCK DIDDDYQSLE KQQSSFDYFQ DGIQTFSMVD DLYGDVMMMM  120
EGDDQMEMCG SVEDFGVVDD QTTMVPSVEE VSHGVDQGLH LVHMLLACAE AVGCRDTRLA  180
DSLLTQIWAS VSPFGDSLQR VSYCFAMGLK SRLSLLHNVN LNGTFNNDTM DVSLIAREEK  240
LEAFQLLHQT TPYIAFGFMV ANEAICQAAQ GKESLHIIDL GMEHTLQWPS LLRTLASRTE  300
GPPKKLRITG LVEDHNVLEL DAGMRVLVEE ARSLGIPIEF NMISEPVKPS LLTKENLDLR  360
EGEALCVNSI MHLHMYVKES RGSLKAILQA FKKLGPSVLT LVEQDANHNG PFFLGRFLES  420
LHFYSAIFDS LEVSLPRNSP QRMKIERLHF ADEIRNIVAF EGLNRVERHE RADQWRRQLG  480
RAGFQVMGLK CTSQARMMLS VYGCDGYSLA SEKGCLLLGW KGRPIMLASA WQVNNASNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-78GRAS family protein