PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004027.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 670aa    MW: 73952.8 Da    PI: 6.6897
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004027.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17e-23123224199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +g
  Rmu_sc0004027.1_g000014.1 123 FAKTLTQSDANNGGGFSVPRFCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNNKKLVAG 204
                                89*********************999****986445444..8999*************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Rmu_sc0004027.1_g000014.1 205 DSIVFF--RAENGDLCVGIRRA 224
                                ******..3488889****996 PP
2Auxin_resp107.91.1e-35284366183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a ++++FevvY+Prast+eF+vk+++v++a++++++ G Rfkm fetedss++++ +Gt+++v+++dp rWp+S+Wr L+
  Rmu_sc0004027.1_g000014.1 284 AATLAVSGQPFEVVYYPRASTPEFCVKASSVRAAMQIRWCSGIRFKMPFETEDSSRISWfMGTISSVHHADP-RWPDSPWRILQ 366
                                6788999*****************************************************************.*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MNSVREPMKN NSNNSEKGLD SQFWHACAGG MVQMPPINSK VFYFPQGHAE YAQGDVDFGN  60
SRIPALILSR ISAIRYMADP ETDEVYAKMR LVPVRESDFD FEDDGVVGNN NGVVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRFCAETIFP RLDYSAEPPV QTILAKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSNFVNNKK LVAGDSIVFF RAENGDLCVG IRRAKRGIGG GPEYPCGWNT  240
PSGNSCSQYG GYSGFSRENG NKSMEKNSSG TMRGRVRAEH VIEAATLAVS GQPFEVVYYP  300
RASTPEFCVK ASSVRAAMQI RWCSGIRFKM PFETEDSSRI SWFMGTISSV HHADPRWPDS  360
PWRILQVAWD EPDLLQNVRC VSPWLVELVS SIPAIDLSPY SPPRKKLRLQ QYPDYSLIGQ  420
LPMPSVYGNF LNSSNTLCHL SDNIPAGIQG ARQAHFGLSS SNLFNKRHSG LIPVGFQQLG  480
HVVPPGIPGG NFMRIAETNE DSPCCVTEGI PYHNLKDNDE IKTPHIFLFG QLIVSGQQMS  540
KSSSGDDSSS DPEKTGNSSD GSGSALHRNG SVENCSDGGS PWDKDHQKSD HNLETGLCKV  600
YVESGDAGTL DLSVFRSYQE LYRKLANMFG KEGSEMLSNV LYRDATGAVR HTGDEPFSEF  660
LKTARGLYMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein