PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004002.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 183aa    MW: 21164.3 Da    PI: 9.492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004002.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.91.4e-47191491128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                + pGfrFhPtdeelv +yL  kve+kk  ++l++ i+++diyk++PwdLp + ++++ke+yfF++r +ky+++ r+nr+t sg+
  Rmu_sc0004002.1_g000004.1  19 MLPGFRFHPTDEELVGFYLPVKVEKKKvsTRLDQLIRQIDIYKYDPWDLPIS-TEGDKECYFFCRRGRKYRNSIRPNRVTGSGF 101
                                579************************65555667***************44.56799************************** PP

                        NAM  83 Wkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatg dk+++s+k+ l  +glkk+Lv+y+g+a kg+ktdW+m+e+rl
  Rmu_sc0004002.1_g000004.1 102 WKATGIDKPIYSAKEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 149
                                ************7443356***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MEVTKVKFKD DDEELAGGML PGFRFHPTDE ELVGFYLPVK VEKKKVSTRL DQLIRQIDIY  60
KYDPWDLPIS TEGDKECYFF CRRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSAKEPLEC  120
IGLKKSLVYY RGSAGKGTKT DWMMNEFRLP PNGKSSTNFL NVKDNTQEAV RLHSFCILLF  180
LNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-71NAC family protein