PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003987.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 190aa    MW: 20721.5 Da    PI: 9.492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003987.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164365123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C++ F++   L  H  +H
  Rmu_sc0003987.1_g000002.1 43 FECKTCNRQFPSFQALGGHRASH 65
                               89**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MKRSITELDH SVTMANCLML LSRGNDYDSL ISTSSSSSPS RVFECKTCNR QFPSFQALGG  60
HRASHKKPRL AGGDGSSSDS QSSSPSKPKT HECNICGLEF AIGQALGGHM RRHRAAVTHN  120
NNHHQNNNGV QSNSMMGLNS NLGQVVVPVL KKTNSSRRIL CLDLNLTPFE NDMEILGIGK  180
KTPPLVEFIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-37C2H2 family protein