PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003949.1_g000009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YB | ||||||||
Protein Properties | Length: 229aa MW: 25131.2 Da PI: 6.2323 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.7 | 1.9e-54 | 48 | 144 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+ Rmu_sc0003949.1_g000009.1 48 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLT 131 69********************************************************************************** PP NF-YB 85 vylkkyrelegek 97 +yl+++re+eg++ Rmu_sc0003949.1_g000009.1 132 LYLHRFREMEGDR 144 ***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MSLVNPCAGL KLSEINMKLA EINHTKNSAA ITNNGGAAAA TDENECTVRE QDRFMPIANV 60 IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK 120 LGFDDYIEPL TLYLHRFREM EGDRGSMRAE TLMKTSSRAM TAAEYHAAAA GSFAGFAPFH 180 HHGFFGYLKD APISNGAAGT SLSQQANAVA AMANGDHQAS HSQYDDNNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 8e-71 | NF-YB family protein |