PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003902.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 392aa MW: 43013.3 Da PI: 6.3289

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003902.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	236	283	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq Rmu_sc0003902.1_g000017.1 236 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 283 8*************************9....788889999999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MDPTAGNVPG SAVTGPDHEE PGLETLQFRE EIQRLMTVPP DNASSFTALL ELPPTQAMEL 60 LHLSPESEPN PAPAAVSGKP PPLLEPRAHP FNSSLTFPSN AALIERAAKF SIFGGGEQSP 120 ETHPFNSSLT FPSNAALIER AAKFSIFGGE QSPETGAVPS NPGVNLEKVK SEPAESDSNP 180 NSSQETKNNQ RSSAKRKERE KKVKVSMKKS KIEAKEDADK IPYVHVRARR GQATDSHSLA 240 ERARREKINA RMKLLQELVP GCSKISGTAL VLDEIINHVQ SLQRQVEFLS MRLATVDPRI 300 DSNLDHLLAT ESLSLMQSNF SNMAPPIMWP ELPINGNRQQ YQQQWHFDAL HQPGWAREED 360 NHIFITPEAS LISCNSSANS ASLHTGHVKT EL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MDPTAGNVPG SAVTGPDHEE PGLETLQFRE EIQRLMTVPP DNASSFTALL ELPPTQAMEL  60
LHLSPESEPN PAPAAVSGKP PPLLEPRAHP FNSSLTFPSN AALIERAAKF SIFGGGEQSP  120
ETHPFNSSLT FPSNAALIER AAKFSIFGGE QSPETGAVPS NPGVNLEKVK SEPAESDSNP  180
NSSQETKNNQ RSSAKRKERE KKVKVSMKKS KIEAKEDADK IPYVHVRARR GQATDSHSLA  240
ERARREKINA RMKLLQELVP GCSKISGTAL VLDEIINHVQ SLQRQVEFLS MRLATVDPRI  300
DSNLDHLLAT ESLSLMQSNF SNMAPPIMWP ELPINGNRQQ YQQQWHFDAL HQPGWAREED  360
NHIFITPEAS LISCNSSANS ASLHTGHVKT EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-100	bHLH family protein