PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003888.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 256aa    MW: 29294.1 Da    PI: 8.4327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003888.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.9e-06103122120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C+ C k+F+r  nL+ H+
  Rmu_sc0003888.1_g000005.1 103 FSCHVCFKTFNRYNNLQMHM 122
                                89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MEPSEISSRF ARTLNLFPNE KDPNQVPNSH DLGFSSSENP KFCSEDHNKE DEVTIALHIG  60
LPEYSDGSVN STEKEVSDHE NVTAEQKFWI PTREQILIGF THFSCHVCFK TFNRYNNLQM  120
HMWGHGSQYR RGPESLKGTQ PRAMLGLPCY CCAEGCKNNI DYPRAKPLKD FRTLQTHYKR  180
KHGVKPFMCR KCGKLLAVKG DWRTHEKNCG KRWLCTCGSD FKHKRSLKDH MKAFGSGHSP  240
FPPTSFDEDS TAASFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-114C2H2 family protein