PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003878.1_g000047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 115aa MW: 13456.4 Da PI: 8.4285 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.1 | 3.6e-19 | 7 | 110 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkr 73 l pG rF P ++el+++yLk+kv+g +++ e+vi e+d+y +Pw++ + k a ++k++yfF++++kk+a+++r Rmu_sc0003878.1_g000047.1 7 LLPGQRFFPMEDELLMFYLKPKVNGMEVPGnEDVICELDLYGDnDPWKIWErfearK--AndlrKNKDLYFFTQKKKKTAKSSR 88 579************************7762467******97549****64344442..1345466689*************** PP NAM 74 knr.atksgyWkatgkdkevls 94 +r + + g+Wk + ke++ Rmu_sc0003878.1_g000047.1 89 ISRtVGSGGTWKGQNAAKEIYL 110 ***4555889********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence |
MEDGRMLLPG QRFFPMEDEL LMFYLKPKVN GMEVPGNEDV ICELDLYGDN DPWKIWERFE 60 ARKANDLRKN KDLYFFTQKK KKTAKSSRIS RTVGSGGTWK GQNAAKEIYL LDDNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-13 | NAC family protein |