PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003813.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 861aa MW: 95485.6 Da PI: 6.5369

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003813.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.9	3.6e-15	6	36	47	77
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l+efDe+krsCrrrLa+hn+rrrk+ Rmu_sc0003813.1_g000017.1 6 GRFHVLKEFDEGKRSCRRRLAGHNKRRRKTL 36 7***************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MFILAGRFHV LKEFDEGKRS CRRRLAGHNK RRRKTLPDTA VNAGSLNDEI GSSYLLISLL 60 RILSNMHSNS SDQTKDQDLL SHLLKSIANL AGTVDGRNIS ALLQASQGLP NTGSSIKTAQ 120 QVPDISALLQ ASQGLPNTGS SIKTAQQVPD TVSNIFEPSR PSVSASSMDD CVIIEEPLRP 180 IGQCPILPAS DMQKRRSSVD GDLGSQITSG LQANKPLPSR ESAPTNSVTP IQLLEIDLNS 240 PYDDSQDYLE NLGTCHVTIN PGIQQDSHKS SPPQTSGNSD STFTQSPSSS SGESQNRTDR 300 IVFKLFGKDP NELPFVLRSQ IIDWISHSPT EIESYLRPRS MHHFDNLPPS RKIHVGGGVL 360 LFSICYHLGS SFQRLLDATN DPFWRTGWVY TRMQHFVAFV YNGQVVLDTT LPLKSQKSCR 420 ISSIKPIAVS LSERAQFVVK GFNLPHSTTR LLCALEGKYL AQEACDDVMD GADTTVEHDE 480 LQCIRFSCSI PNVTGRGFIE VEDLGLSSSF FPFIVAEQEV CSEICMLEDA IEAAETVDDI 540 QADPEILEAK NQAMDFIHEL GWLLHRSHVK FRLGHLDPNL DLFPFRRFKL LMEFSMDHDW 600 CAVVKKLLKL LFDSTVDTGE HPSVQLALLD MALLHRAVRR NCRPMVELLL RFVPDKGLES 660 EQKKYVEGED NSFLFKPDGV GPLGLTPLHV AASIDGCEHV LDALTDDPGK VGIEAWKNAR 720 DSTGMTPYDY ASMQGRYSYI NLVQRKISKK LESGHVVLDI PGTVLESNSK QKQSDGHRSS 780 KVASLDTEKF EINALIRRDC KLCSQKLAYG STRSLVYRPA MLSMVAIAAV CVCVALLFKS 840 TPEVVFIFHP FRWEHLKFGS S

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MFILAGRFHV LKEFDEGKRS CRRRLAGHNK RRRKTLPDTA VNAGSLNDEI GSSYLLISLL  60
RILSNMHSNS SDQTKDQDLL SHLLKSIANL AGTVDGRNIS ALLQASQGLP NTGSSIKTAQ  120
QVPDISALLQ ASQGLPNTGS SIKTAQQVPD TVSNIFEPSR PSVSASSMDD CVIIEEPLRP  180
IGQCPILPAS DMQKRRSSVD GDLGSQITSG LQANKPLPSR ESAPTNSVTP IQLLEIDLNS  240
PYDDSQDYLE NLGTCHVTIN PGIQQDSHKS SPPQTSGNSD STFTQSPSSS SGESQNRTDR  300
IVFKLFGKDP NELPFVLRSQ IIDWISHSPT EIESYLRPRS MHHFDNLPPS RKIHVGGGVL  360
LFSICYHLGS SFQRLLDATN DPFWRTGWVY TRMQHFVAFV YNGQVVLDTT LPLKSQKSCR  420
ISSIKPIAVS LSERAQFVVK GFNLPHSTTR LLCALEGKYL AQEACDDVMD GADTTVEHDE  480
LQCIRFSCSI PNVTGRGFIE VEDLGLSSSF FPFIVAEQEV CSEICMLEDA IEAAETVDDI  540
QADPEILEAK NQAMDFIHEL GWLLHRSHVK FRLGHLDPNL DLFPFRRFKL LMEFSMDHDW  600
CAVVKKLLKL LFDSTVDTGE HPSVQLALLD MALLHRAVRR NCRPMVELLL RFVPDKGLES  660
EQKKYVEGED NSFLFKPDGV GPLGLTPLHV AASIDGCEHV LDALTDDPGK VGIEAWKNAR  720
DSTGMTPYDY ASMQGRYSYI NLVQRKISKK LESGHVVLDI PGTVLESNSK QKQSDGHRSS  780
KVASLDTEKF EINALIRRDC KLCSQKLAYG STRSLVYRPA MLSMVAIAAV CVCVALLFKS  840
TPEVVFIFHP FRWEHLKFGS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein