PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003735.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 272aa MW: 30921.3 Da PI: 4.2544 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.3 | 1.1e-09 | 29 | 64 | 15 | 50 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR+ ++ K A+ L +LC+a+v+ +++++tg++ ++ Rmu_sc0003735.1_g000004.1 29 KRKSTLKKSASQLEILCGAQVCCVLVGPTGNVEVWP 64 9*******************************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence |
MVTKSQTTIS GENIKEIRSL RFLEKPIQKR KSTLKKSASQ LEILCGAQVC CVLVGPTGNV 60 EVWPENPADA VSIIAKYKQC KKKTKVCREV NRSKNVEQFE ENKGLAMGDD DIDQSMNTLE 120 NYEEDKGFDI DQFLNNTMEN LEDQNKGIDM GDDIDQFLMN NTRENVEPNN GFDTDHDFDQ 180 FLNEFFGDTN DLKVGFPECS TSNAHMPTPG FEDHQIDNVC GVWPWETLWS TPQYSGFDGA 240 YYLPKFENDG FLCQEQPKLM GSNQTFRDIG SN |