PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003704.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 380aa MW: 42993.3 Da PI: 4.5648

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003704.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.8	2.1e-36	8	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvka..eekewyfFskrdkkyat 70 +ppG+ FhPtde l+++ L++k + k+ e++++i+e+d++k+eP++Lp + + ++ +wyfF++r+ ky++ Rmu_sc0003704.1_g000002.1 8 VPPGYGFHPTDEKLLSD-LEEKNQCKDSEITTIIPEIDVCKHEPHELPGsfslfsssglhgQ--SwdSQGKWYFFTPREYKYPN 88 59***********66.9****9999*************55889888876542..2325559********* PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+nr+t++g+Wk tgkd+++++ +++++ ++tL+fyk +k++kt Wv+hey l Rmu_sc0003704.1_g000002.1 89 SRRSNRTTREGFWKITGKDRDIKALrSKAVIERRRTLTFYKRGVSKSQKTGWVIHEYYL 147 ******************987466678999**9999999********76 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSCGGFTVPP GYGFHPTDEK LLSDLEEKNQ CKDSEITTII PEIDVCKHEP HELPGSFSLF 60 SSSGLHGQSW DSQGKWYFFT PREYKYPNSR RSNRTTREGF WKITGKDRDI KALRSKAVIE 120 RRRTLTFYKR GVSKSQKTGW VIHEYYLIQA HSDPPKQIGD FVVCCLKYKS DNSDHDKDAP 180 FFDRGSTSCS MASNVENQAE ENWASIKQVN VVPIPNGNDD EAETGGGTIT EEEEYLALKE 240 LEDALQIPIG NPHDFQGMQT DPCHIDENDL STSVEGRPDK SNSSDMIEEP LDNPENLDSI 300 FDPPALPQLH QLHQSPMYTT NDHNDECRKR TYPFEDNDPS LTKKNSISTN DDDELVSNTA 360 SSPENQAANM IPEVRISMLF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSCGGFTVPP GYGFHPTDEK LLSDLEEKNQ CKDSEITTII PEIDVCKHEP HELPGSFSLF  60
SSSGLHGQSW DSQGKWYFFT PREYKYPNSR RSNRTTREGF WKITGKDRDI KALRSKAVIE  120
RRRTLTFYKR GVSKSQKTGW VIHEYYLIQA HSDPPKQIGD FVVCCLKYKS DNSDHDKDAP  180
FFDRGSTSCS MASNVENQAE ENWASIKQVN VVPIPNGNDD EAETGGGTIT EEEEYLALKE  240
LEDALQIPIG NPHDFQGMQT DPCHIDENDL STSVEGRPDK SNSSDMIEEP LDNPENLDSI  300
FDPPALPQLH QLHQSPMYTT NDHNDECRKR TYPFEDNDPS LTKKNSISTN DDDELVSNTA  360
SSPENQAANM IPEVRISMLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	8e-32	NAC family protein