PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003693.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 467aa MW: 53140.3 Da PI: 5.8265

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003693.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143	1.7e-44	11	135	1	126
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp+GfrFhPt+eelv++yLkkkv+g + e++++i+e+d++k+eP +Lp +a++ ew+fF++r+ ky++++r+nr+tk+gyW Rmu_sc0003693.1_g000010.1 11 LPVGFRFHPTEEELVNHYLKKKVHGGNdSEINQIIREIDLCKYEPAELP---EARDMEWFFFTRRAYKYNKSSRSNRSTKKGYW 91 79********************9985667778***********...45889*********************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126 k tgk++ ++++ +++++g kktL+fy+gr pk++kt+Wv+he Rmu_sc0003693.1_g000010.1 92 KITGKERGIKARrSKAVIGKKKTLTFYQGRVPKSKKTSWVIHEC 135 ******98566779**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MSSERTTPLS LPVGFRFHPT EEELVNHYLK KKVHGGNDSE INQIIREIDL CKYEPAELPE 60 ARDMEWFFFT RRAYKYNKSS RSNRSTKKGY WKITGKERGI KARRSKAVIG KKKTLTFYQG 120 RVPKSKKTSW VIHECYLPGN GVIKQAQGDF VICRLKIRSD KKDSSVSNEG EPGSASVSEM 180 NQEGNEELLF HQPQPLDDCC SSALRSPVSQ KLESIRQTNV TNDDCNELQS PFGDSDSCLL 240 DGNEVSTCDE NEAVYDVFPQ LRDLSEQNLD SLFGPHQPQA YCPAILQQSP IYTKLGDVPH 300 PLQPQDYEPS KFQSPIYTKL GNVPHPLQPQ DYQPSKLQLP IYTKLGNVPD ANLYCGECNN 360 WQSAIKKNVS TDENQATDFK VPEVRMVHHP QTKENLESVV YPFQPQNFTS QPLMYTEFGD 420 ALHNTESNEL QSSFGDNDSS LTKFLNTNFA YQDCYLVDQT ADSFQRL

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MSSERTTPLS LPVGFRFHPT EEELVNHYLK KKVHGGNDSE INQIIREIDL CKYEPAELPE  60
ARDMEWFFFT RRAYKYNKSS RSNRSTKKGY WKITGKERGI KARRSKAVIG KKKTLTFYQG  120
RVPKSKKTSW VIHECYLPGN GVIKQAQGDF VICRLKIRSD KKDSSVSNEG EPGSASVSEM  180
NQEGNEELLF HQPQPLDDCC SSALRSPVSQ KLESIRQTNV TNDDCNELQS PFGDSDSCLL  240
DGNEVSTCDE NEAVYDVFPQ LRDLSEQNLD SLFGPHQPQA YCPAILQQSP IYTKLGDVPH  300
PLQPQDYEPS KFQSPIYTKL GNVPHPLQPQ DYQPSKLQLP IYTKLGNVPD ANLYCGECNN  360
WQSAIKKNVS TDENQATDFK VPEVRMVHHP QTKENLESVV YPFQPQNFTS QPLMYTEFGD  420
ALHNTESNEL QSSFGDNDSS LTKFLNTNFA YQDCYLVDQT ADSFQRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	1e-35	NAC family protein