PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003641.1_g000018.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 286aa    MW: 30582.5 Da    PI: 4.5158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003641.1_g000018.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011259282123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ++C+ C+ksF +   L++H +  H
  Rmu_sc0003641.1_g000018.1 259 FSCGSCSKSFGSDGALQSHNKAkH 282
                                89*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEFWGVEVKA GEPLSVVPDQ GNVVHLSQAC LGESKKAADS VVIYGKTAEK KLVLGHLIPG  60
QIPQLSFDLV FDDEFELSHN WKSGSVHFAE FESESEEEEE ELPMIAAENG KVENAKPAIA  120
KSNAVKPESS GKQKVKIEEP IKVVADEDDS ASDMDDSDDL LDEDDSSDDD DDESEDDSDE  180
EDEETPTPKK PESKKRAQVS GSVKTPVSAK KAKIVTSTPQ KTDGKKGGHT DTPHPAKKGK  240
TPATDKSKTQ TPKSAGGNFS CGSCSKSFGS DGALQSHNKA KHSAGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-28C2H2 family protein